KERMIT -- Research Unit Knowledge-based Systems

Stock Michiel

michiel.stock@ugent.be
@KERMIT, office 110.54
(+32) 9 264.60.18

Stock Michiel
https://orcid.org/0000-0003-0903-6061
Biblio UGent
Google Scholar
#michielstock
https://michielstock.github.io/

Research Interests:

Machine learning methods for understanding, predicting and controlling community ecosystems.

Learning from networks

Courses

Selected Topics in Mathematical Optimization

Biography

Name:

Journal papers Conference papers

Journal papers

All
2024 (5)
2023 (2)
2022 (10)
2021 (10)
2020 (6)
2019 (3)
2018 (2)
2017 (2)
2016 (2)
2015 (1)
2014 (2)
2013 (2)
2012 (1)

(5) Engineering is evolution : a perspective on design processes to engineer biology
S. D. Castle, M. Stock and T. E. Gorochowski
(2024) NATURE COMMUNICATIONS. 15, 3640.

(4) Plant science in the age of simulation intelligence
M. Stock, O. Pieters, T. De Swaef and F. wyffels
(2024) FRONTIERS IN PLANT SCIENCE. 14, 1299208.

(3) The role of Helicobacter suis, Fusobacterium gastrosuis, and the pars oesophageal microbiota in gastric ulceration in slaughter pigs receiving meal or pelleted feed
E. Taillieu, S. Taelman, S. De Bruyckere, E. Goossens, I. Chantziaras, C. Van Steenkiste, P. Yde, S. Hanssens, D. De Meyer, W. Van Criekinge, M. Stock, D. Maes, K. Chiers and F. Haesebrouck
(2024) VETERINARY RESEARCH. 55, 15.

(2) Open-endedness in synthetic biology: A route to continual innovation for biological design
M. Stock and T. E. Gorochowski
(2024) SCIENCE ADVANCES. 10, eadi3621.

(1) Impedimetric biofilm characterisation with microelectrode arrays using equivalent electrical circuit features and ensemble classifiers
M. Van Haeverbeke, C. Cums, T. Vackier, D. Braeken, M. Stock, H. Steenackers and B. De Baets
(2024) CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS. 244, 105048.

Conference papers

All
2015 (1)
2014 (1)
2012 (1)

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Editor

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Awards

M. Stock

Date	Title
19/01/2019	EOS-prize 2018 goes to Sarah Vanbesien
26/10/2018	Michiel Stock wins public prize TEDxGhent PhD contest
08/03/2018	Best Poster Presentation Award for Michiel Stock
02/10/2017	Michiel Stock reaches the Flemish PhD Cup Final
12/12/2016	Gold medal for student entry at the iGEM competition in Boston
18/08/2014	2015 IEEE CIS Outstanding TFS Paper Award

Students

PhD Students

Name	Research Topic
Spanoghe Bram	Probabilistic modelling of plant growth

Affiliated
Taelman Steff	Causal discovery pipeline for microbiome data
De Block Miguel
Van de Walle Emma

MSc Students

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Name	Research Topic

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Graduates

PhD Students

Name	Title	Date
P. Dewulf	Exploiting data compositionality using tensor products and hyperdimensional computing	13/12/2023
D. Boeckaerts	Predicting and understanding phage-host interactions with machine learning tools based on phage receptor-binding proteins	19/10/2023
M. Van Haeverbeke	Advances in impedimetric modelling of electrochemical systems in engineering and the life sciences	07/07/2023
O. Pieters	Reservoir computing with plants	08/02/2022

MSc Students

Name	Title	Date
M. Fatjanov	The potential of hyperdimensional computing for protein sequence representation	2022 - 2023
J. De Landsheere	Data-driven prediction of pharmaceutical granules' size	2021 - 2022
W. Decrop	Computational prediction of bacteria-phage interactions of Escherichia coli through omics data analysis and machine learning	2021 - 2022
D. Snoeck	A data-based view for brewing	2021 - 2022
B. Spanoghe	Probabilistic programming for Bayesian modeling and its applications in biology	2021 - 2022
W. Van Belle	Automating the design of biological robots using MAP-Elites	2021 - 2022
S. Van Hoye	Evolution and design of metabolic networks using quality-diversity optimization algorithms	2021 - 2022
S. Van Parys	BIOBOTS: a new type of multicellularity	2021 - 2022
Y. Bae	Drug-drug interaction prediction for side effects, diseases, and cell lines using three-step kernel ridge regression	2021 - 2022
J. Vermout	A data-driven approach to the design of new cocktail recipes	2019 - 2020
T. Ntumba	Prediction of water quality parameters of Flemish surface waters using machine learning techniques	2019 - 2020
T. Vanneste	Predicting interactions between bacteria and their prophages based on genomic sequence data	2019 - 2020
S. Taelman	A dual computational approach to map domain architecture in phage lytic proteins	2018 - 2019
A. Deloose	Acoustic monitoring of bats with self-organizing maps	2018 - 2019
L. Hoebeke	Automated recognition of people and identification of animal species in camera trap images	2017 - 2018

Stock Michiel

Courses

Biography

Journal papers

Conference papers

Editor

Awards

Students

PhD Students

Affiliated

MSc Students

Graduates

PhD Students

MSc Students